HL_3JAJ_005

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CAGCUACUCG

Length

10 nucleotides

Bulged bases

3JAJ|1|4|A|36, 3JAJ|1|4|U|38, 3JAJ|1|4|C|39

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAJ_005 not in the Motif Atlas

Geometric match to HL_1E8O_002

Geometric discrepancy: 0.173

The information below is about HL_1E8O_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73255.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

3JAJ|1|4|C|31
3JAJ|1|4|A|32
3JAJ|1|4|G|33
3JAJ|1|4|C|34
3JAJ|1|4|U|35
3JAJ|1|4|A|36
3JAJ|1|4|C|37
3JAJ|1|4|U|38
3JAJ|1|4|C|39
3JAJ|1|4|G|40

Current chains

Chain 4

SRP 7S RNA

Nearby chains

Chain K

Ribosomal protein uL11