HL_3JAJ_053

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

3JAJ|1|5|A|3642, 3JAJ|1|5|A|3643, 3JAJ|1|5|U|3644, 3JAJ|1|5|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAJ_053 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.188

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

3JAJ|1|5|U|3639
3JAJ|1|5|U|3640
3JAJ|1|5|U|3641
3JAJ|1|5|A|3642
3JAJ|1|5|A|3643
3JAJ|1|5|U|3644
3JAJ|1|5|U|3645
3JAJ|1|5|A|3646
3JAJ|1|5|A|3647
3JAJ|1|5|A|3648
3JAJ|1|5|A|3649

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 2

Nascent chain

Chain A

Ribosomal protein uL2

Chain j

Ribosomal protein eL37