HL_3JAJ_068

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

3JAJ|1|5|U|4419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAJ_068 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.2529

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3JAJ|1|5|C|4417
3JAJ|1|5|G|4418
3JAJ|1|5|U|4419
3JAJ|1|5|U|4420
3JAJ|1|5|C|4421
3JAJ|1|5|A|4422
3JAJ|1|5|U|4423
3JAJ|1|5|A|4424
3JAJ|1|5|G|4425

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

Ribosomal protein uL6

Chain I

Ribosomal protein uL16

Chain m

Ribosomal protein eL40