HL_8C3A_062

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.3

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

8C3A|1|1|C|2812
8C3A|1|1|G|2813
8C3A|1|1|U|2814
8C3A|1|1|U|2815
8C3A|1|1|C|2816
8C3A|1|1|A|2817
8C3A|1|1|U|2818
8C3A|1|1|A|2819
8C3A|1|1|G|2820

Current chains

Chain 1

25S

Nearby chains

Chain AN

60S ribosomal protein L40-B

Chain r

60S ribosomal protein L10