HL_3JAN_001
3D structure
- PDB id
- 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the scanning state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- GUAGUGGUUAUC
- Length
- 12 nucleotides
- Bulged bases
- 3JAN|1|3|G|17, 3JAN|1|3|G|18, 3JAN|1|3|U|19
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JAN_001 not in the Motif Atlas
- Homologous match to HL_5E6M_001
- Geometric discrepancy: 0.4027
- The information below is about HL_5E6M_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99769.3
- Basepair signature
- cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
3JAN|1|3|G|12
3JAN|1|3|U|13
3JAN|1|3|A|14
3JAN|1|3|G|15
3JAN|1|3|U|16
3JAN|1|3|G|17
3JAN|1|3|G|18
3JAN|1|3|U|19
3JAN|1|3|U|20
3JAN|1|3|A|21
3JAN|1|3|U|22
3JAN|1|3|C|23
Current chains
- Chain 3
- Val tRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain J
- Ribosomal protein uL5
- Chain o
- Ribosomal protein eL42
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