HL_3JAN_029

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

3JAN|1|5|C|1676, 3JAN|1|5|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_029 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.158

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

3JAN|1|5|C|1675
3JAN|1|5|C|1676
3JAN|1|5|U|1677
3JAN|1|5|C|1678
3JAN|1|5|A|1679
3JAN|1|5|G|1680

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain a

Ribosomal protein uL15

Chain b

Ribosomal protein eL29

Chain o

Ribosomal protein eL42