HL_3JAN_052

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGUGC

Length

5 nucleotides

Bulged bases

3JAN|1|5|G|3615, 3JAN|1|5|U|3616

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_052 not in the Motif Atlas

Homologous match to HL_5TBW_045

Geometric discrepancy: 0.3069

The information below is about HL_5TBW_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.2

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

3JAN|1|5|G|3614
3JAN|1|5|G|3615
3JAN|1|5|U|3616
3JAN|1|5|G|3617
3JAN|1|5|C|3618

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

Ribosomal protein eL19

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain W

Ribosomal protein eL24