HL_3JAN_058

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

3JAN|1|5|A|3876, 3JAN|1|5|A|3877, 3JAN|1|5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_058 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.2597

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

3JAN|1|5|G|3873
3JAN|1|5|G|3874
3JAN|1|5|G|3875
3JAN|1|5|A|3876
3JAN|1|5|A|3877
3JAN|1|5|C|3878
3JAN|1|5|G|3879
3JAN|1|5|G|3880
3JAN|1|5|G|3881
3JAN|1|5|C|3882

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein uL3

Chain e

Ribosomal protein eL32