HL_3JAN_060

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CCGAGG

Length

6 nucleotides

Bulged bases

3JAN|1|5|G|4104

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_060 not in the Motif Atlas

Geometric match to HL_4LGT_001

Geometric discrepancy: 0.2838

The information below is about HL_4LGT_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

3JAN|1|5|C|4102
3JAN|1|5|C|4103
3JAN|1|5|G|4104
3JAN|1|5|A|4105
3JAN|1|5|G|4106
3JAN|1|5|G|4107

Current chains

Chain 5

28S ribosomal RNA

Nearby chains