HL_3JAN_067
3D structure
- PDB id
- 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the scanning state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- UUUGGGUUUUA
- Length
- 11 nucleotides
- Bulged bases
- 3JAN|1|5|U|4354
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JAN_067 not in the Motif Atlas
- Geometric match to HL_4V83_139
- Geometric discrepancy: 0.2987
- The information below is about HL_4V83_139
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53597.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 31
Unit IDs
3JAN|1|5|U|4352
3JAN|1|5|U|4353
3JAN|1|5|U|4354
3JAN|1|5|G|4355
3JAN|1|5|G|4356
3JAN|1|5|G|4357
3JAN|1|5|U|4358
3JAN|1|5|U|4359
3JAN|1|5|U|4360
3JAN|1|5|U|4361
3JAN|1|5|A|4362
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain L
- Ribosomal protein eL13
- Chain a
- Ribosomal protein uL15
- Chain i
- Ribosomal protein eL36
- Chain o
- Ribosomal protein eL42
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