3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
AAGCAGAAU
Length
9 nucleotides
Bulged bases
3JAN|1|5|G|4475
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JAN_069 not in the Motif Atlas
Geometric match to HL_7RQB_057
Geometric discrepancy: 0.3574
The information below is about HL_7RQB_057
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_53619.1
Basepair signature
cWW-F-F
Number of instances in this motif group
11

Unit IDs

3JAN|1|5|A|4473
3JAN|1|5|A|4474
3JAN|1|5|G|4475
3JAN|1|5|C|4476
3JAN|1|5|A|4477
3JAN|1|5|G|4478
3JAN|1|5|A|4479
3JAN|1|5|A|4480
3JAN|1|5|U|4481

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain H
Ribosomal protein uL6
Chain m
Ribosomal protein eL40

Coloring options:


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