HL_3JAN_080
3D structure
- PDB id
- 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the scanning state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- CAGCUAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JAN_080 not in the Motif Atlas
- Geometric match to HL_4V9F_001
- Geometric discrepancy: 0.1818
- The information below is about HL_4V9F_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_93438.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
3JAN|1|8|C|47
3JAN|1|8|A|48
3JAN|1|8|G|49
3JAN|1|8|C|50
3JAN|1|8|U|51
3JAN|1|8|A|52
3JAN|1|8|G|53
3JAN|1|8|C|54
3JAN|1|8|U|55
3JAN|1|8|G|56
Current chains
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- Ribosomal protein uL23
- Chain h
- Ribosomal protein uL29
- Chain j
- Ribosomal protein eL37
- Chain l
- Ribosomal protein eL39
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