HL_3JAN_081
3D structure
- PDB id
- 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the scanning state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- GUGAAUUGCAGGACACAUUGAUC
- Length
- 23 nucleotides
- Bulged bases
- 3JAN|1|8|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JAN_081 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.5157
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
3JAN|1|8|G|68
3JAN|1|8|U|69
3JAN|1|8|G|70
3JAN|1|8|A|71
3JAN|1|8|A|72
3JAN|1|8|U|73
3JAN|1|8|U|74
3JAN|1|8|G|75
3JAN|1|8|C|76
3JAN|1|8|A|77
3JAN|1|8|G|78
3JAN|1|8|G|79
3JAN|1|8|A|80
3JAN|1|8|C|81
3JAN|1|8|A|82
3JAN|1|8|C|83
3JAN|1|8|A|84
3JAN|1|8|U|85
3JAN|1|8|U|86
3JAN|1|8|G|87
3JAN|1|8|A|88
3JAN|1|8|U|89
3JAN|1|8|C|90
Current chains
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- Ribosomal protein uL24
- Chain h
- Ribosomal protein uL29
- Chain j
- Ribosomal protein eL37
- Chain l
- Ribosomal protein eL39
- Chain z
- SRP54
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