HL_3JAN_087

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UUCGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_087 not in the Motif Atlas

Geometric match to HL_5J7L_007

Geometric discrepancy: 0.2209

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

3JAN|1|S2|U|197
3JAN|1|S2|U|198
3JAN|1|S2|C|199
3JAN|1|S2|G|200
3JAN|1|S2|C|201
3JAN|1|S2|G|202

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SI

Ribosomal protein eS8