HL_3JAN_089

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

3JAN|1|S2|C|324

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_089 not in the Motif Atlas

Geometric match to HL_5TBW_018

Geometric discrepancy: 0.3923

The information below is about HL_5TBW_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

3JAN|1|S2|C|322
3JAN|1|S2|C|323
3JAN|1|S2|C|324
3JAN|1|S2|C|325
3JAN|1|S2|C|326
3JAN|1|S2|G|327
3JAN|1|S2|U|328
3JAN|1|S2|G|329

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SG

Ribosomal protein eS6