3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
CCUGAGAAACGG
Length
12 nucleotides
Bulged bases
3JAN|1|S2|C|450, 3JAN|1|S2|G|451
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JAN_092 not in the Motif Atlas
Homologous match to HL_4V88_195
Geometric discrepancy: 0.3098
The information below is about HL_4V88_195
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.1
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

3JAN|1|S2|C|441
3JAN|1|S2|C|442
3JAN|1|S2|U|443
3JAN|1|S2|G|444
3JAN|1|S2|A|445
3JAN|1|S2|G|446
3JAN|1|S2|A|447
3JAN|1|S2|A|448
3JAN|1|S2|A|449
3JAN|1|S2|C|450
3JAN|1|S2|G|451
3JAN|1|S2|G|452

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SE
Ribosomal protein eS4
Chain SG
Ribosomal protein eS6
Chain SI
Ribosomal protein eS8
Chain SY
Ribosomal protein eS24

Coloring options:


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