HL_3JAN_094

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

3JAN|1|S2|A|500

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_094 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.2564

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

3JAN|1|S2|C|498
3JAN|1|S2|G|499
3JAN|1|S2|A|500
3JAN|1|S2|C|501
3JAN|1|S2|C|502
3JAN|1|S2|C|503
3JAN|1|S2|G|504

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SY

Ribosomal protein eS24