HL_3JAN_124

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

3JAN|1|5|A|1984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_124 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3384

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

3JAN|1|5|C|1978
3JAN|1|5|A|1979
3JAN|1|5|U|1980
3JAN|1|5|G|1981
3JAN|1|5|G|1982
3JAN|1|5|A|1983
3JAN|1|5|A|1984
3JAN|1|5|G|1985
3JAN|1|5|U|1986
3JAN|1|5|C|1987
3JAN|1|5|G|1988

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain K

Ribosomal protein uL11