HL_3JAN_136

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GAGCGGUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_136 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3028

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3JAN|1|S2|G|1420
3JAN|1|S2|A|1421
3JAN|1|S2|G|1422
3JAN|1|S2|C|1423
3JAN|1|S2|G|1424
3JAN|1|S2|G|1425
3JAN|1|S2|U|1426
3JAN|1|S2|C|1427

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SQ

Ribosomal protein uS9

Chain ST

Ribosomal protein eS19