HL_3JAP_010

3D structure

PDB id

3JAP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

CCUUGUG

Length

7 nucleotides

Bulged bases

3JAP|1|2|U|279

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAP_010 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3587

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

3JAP|1|2|C|274
3JAP|1|2|C|275
3JAP|1|2|U|276
3JAP|1|2|U|277
3JAP|1|2|G|278
3JAP|1|2|U|279
3JAP|1|2|G|280

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

eS6