HL_3JAQ_011

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

3JAQ|1|2|G|336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAQ_011 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.1091

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

3JAQ|1|2|G|329
3JAQ|1|2|A|330
3JAQ|1|2|U|331
3JAQ|1|2|A|332
3JAQ|1|2|G|333
3JAQ|1|2|U|334
3JAQ|1|2|G|335
3JAQ|1|2|G|336
3JAQ|1|2|C|337

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

eS8

Chain L

uS17