HL_3JAQ_032

3D structure

PDB id

3JAQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

6 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

3JAQ|1|2|U|1313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAQ_032 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.2425

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

3JAQ|1|2|C|1308
3JAQ|1|2|U|1309
3JAQ|1|2|U|1310
3JAQ|1|2|A|1311
3JAQ|1|2|A|1312
3JAQ|1|2|U|1313
3JAQ|1|2|U|1314
3JAQ|1|2|G|1315

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

eS17