HL_3JAQ_036
3D structure
- PDB id
- 3JAQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 3JAQ|1|2|U|1555, 3JAQ|1|2|U|1556, 3JAQ|1|2|A|1557
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JAQ_036 not in the Motif Atlas
- Homologous match to HL_8CRE_223
- Geometric discrepancy: 0.2782
- The information below is about HL_8CRE_223
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50951.1
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
3JAQ|1|2|A|1548
3JAQ|1|2|U|1549
3JAQ|1|2|U|1550
3JAQ|1|2|G|1551
3JAQ|1|2|U|1552
3JAQ|1|2|A|1553
3JAQ|1|2|A|1554
3JAQ|1|2|U|1555
3JAQ|1|2|U|1556
3JAQ|1|2|A|1557
3JAQ|1|2|U|1558
3JAQ|1|2|U|1559
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain P
- uS19
- Chain S
- uS13
- Chain T
- eS19
- Chain d
- uS14
Coloring options: