HL_3JBN_028

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AUGAU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBN_028 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2229

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

3JBN|1|A|A|1397
3JBN|1|A|U|1400
3JBN|1|A|G|1401
3JBN|1|A|A|1402
3JBN|1|A|U|1403

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein uS2

Chain G

40S ribosomal protein uS5