HL_3JBN_053

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

3JBN|1|AA|C|726

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBN_053 not in the Motif Atlas

Homologous match to HL_5TBW_014

Geometric discrepancy: 0.1832

The information below is about HL_5TBW_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

3JBN|1|AA|U|718
3JBN|1|AA|C|719
3JBN|1|AA|U|720
3JBN|1|AA|U|721
3JBN|1|AA|G|722
3JBN|1|AA|A|723
3JBN|1|AA|A|724
3JBN|1|AA|A|725
3JBN|1|AA|C|726
3JBN|1|AA|A|727

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A8

60S ribosomal protein eL32

Chain AE

60S ribosomal protein uL3

Chain AO

60S ribosomal protein uL15