HL_3JBN_088

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

3JBN|1|AA|A|2549

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBN_088 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.2288

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

3JBN|1|AA|G|2546
3JBN|1|AA|U|2547
3JBN|1|AA|A|2548
3JBN|1|AA|A|2549
3JBN|1|AA|C|2550
3JBN|1|AA|U|2551
3JBN|1|AA|A|2552
3JBN|1|AA|U|2553
3JBN|1|AA|G|2554
3JBN|1|AA|A|2555
3JBN|1|AA|C|2556

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain A

Small subunit ribosomal RNA; SSU rRNA