HL_3JBN_099

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGCUCCUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBN_099 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1958

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3JBN|1|AA|C|3199
3JBN|1|AA|G|3200
3JBN|1|AA|C|3201
3JBN|1|AA|U|3202
3JBN|1|AA|C|3203
3JBN|1|AA|C|3204
3JBN|1|AA|U|3205
3JBN|1|AA|A|3206
3JBN|1|AA|G|3207

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein uL6

Chain AQ

60S ribosomal protein uL16

Chain Af

60S ribosomal protein eL40