HL_3JBN_105

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CUGAACGCCUCUUAAG

Length

16 nucleotides

Bulged bases

3JBN|1|AA|G|3500, 3JBN|1|AA|C|3504, 3JBN|1|AA|U|3506

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBN_105 not in the Motif Atlas

Homologous match to HL_9AXU_063

Geometric discrepancy: 0.329

The information below is about HL_9AXU_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.4

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

12

Unit IDs

3JBN|1|AA|C|3494
3JBN|1|AA|U|3495
3JBN|1|AA|G|3496
3JBN|1|AA|A|3497
3JBN|1|AA|A|3498
3JBN|1|AA|C|3499
3JBN|1|AA|G|3500
3JBN|1|AA|C|3501
3JBN|1|AA|C|3502
3JBN|1|AA|U|3503
3JBN|1|AA|C|3504
3JBN|1|AA|U|3505
3JBN|1|AA|U|3506
3JBN|1|AA|A|3507
3JBN|1|AA|A|3508
3JBN|1|AA|G|3509

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein uL6

Chain AK

60S ribosomal protein uL13

Chain Af

60S ribosomal protein eL40