HL_3JBO_001

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CAGCCGGUAG

Length

10 nucleotides

Bulged bases

3JBO|1|7|C|16, 3JBO|1|7|C|17, 3JBO|1|7|G|18, 3JBO|1|7|G|19, 3JBO|1|7|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_001 not in the Motif Atlas

Homologous match to HL_6PMO_003

Geometric discrepancy: 0.1783

The information below is about HL_6PMO_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBO|1|7|C|13
3JBO|1|7|A|14
3JBO|1|7|G|15
3JBO|1|7|C|16
3JBO|1|7|C|17
3JBO|1|7|G|18
3JBO|1|7|G|19
3JBO|1|7|U|20
3JBO|1|7|A|21
3JBO|1|7|G|22

Current chains

Chain 7

P/E-tRNA

Nearby chains