HL_3JBO_008

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

AAGGAAUU

Length

8 nucleotides

Bulged bases

3JBO|1|A|U|251

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_008 not in the Motif Atlas

Geometric match to HL_5DH6_002

Geometric discrepancy: 0.2876

The information below is about HL_5DH6_002

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

3JBO|1|A|A|245
3JBO|1|A|A|246
3JBO|1|A|G|247
3JBO|1|A|G|248
3JBO|1|A|A|249
3JBO|1|A|A|250
3JBO|1|A|U|251
3JBO|1|A|U|252

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein eS4

Chain V

40S ribosomal protein uS17