HL_3JBO_011

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UUAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_011 not in the Motif Atlas

Geometric match to HL_4V88_194

Geometric discrepancy: 0.1317

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

3JBO|1|A|U|374
3JBO|1|A|U|375
3JBO|1|A|A|376
3JBO|1|A|G|377
3JBO|1|A|A|378
3JBO|1|A|G|379

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein uS4

Chain G

40S ribosomal protein uS5

Chain K

40S ribosomal protein uS8

Chain V

40S ribosomal protein uS17