HL_3JBO_012
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- CCUGAGAAAUAG
- Length
- 12 nucleotides
- Bulged bases
- 3JBO|1|A|A|406, 3JBO|1|A|U|408, 3JBO|1|A|A|409
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JBO_012 not in the Motif Atlas
- Geometric match to HL_4V88_195
- Geometric discrepancy: 0.1523
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
3JBO|1|A|C|399
3JBO|1|A|C|400
3JBO|1|A|U|401
3JBO|1|A|G|402
3JBO|1|A|A|403
3JBO|1|A|G|404
3JBO|1|A|A|405
3JBO|1|A|A|406
3JBO|1|A|A|407
3JBO|1|A|U|408
3JBO|1|A|A|409
3JBO|1|A|G|410
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 1
- 40S ribosomal protein eS24
- Chain F
- 40S ribosomal protein eS4
- Chain H
- 40S ribosomal protein eS6
- Chain L
- 40S ribosomal protein eS8
Coloring options: