HL_3JBO_045

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUGAAAGGC

Length

9 nucleotides

Bulged bases

3JBO|1|AA|G|226, 3JBO|1|AA|A|227, 3JBO|1|AA|A|228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_045 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.2359

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

3JBO|1|AA|G|224
3JBO|1|AA|U|225
3JBO|1|AA|G|226
3JBO|1|AA|A|227
3JBO|1|AA|A|228
3JBO|1|AA|A|229
3JBO|1|AA|G|230
3JBO|1|AA|G|231
3JBO|1|AA|C|232

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AC

5.8S ribosomal RNA; 5.8S rRNA

Chain AF

60S ribosomal protein uL4

Chain AZ

60S ribosomal protein uL24