HL_3JBO_046
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UUUGAGAUUG
- Length
- 10 nucleotides
- Bulged bases
- 3JBO|1|AA|A|291
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JBO_046 not in the Motif Atlas
- Homologous match to HL_8C3A_008
- Geometric discrepancy: 0.3534
- The information below is about HL_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
3JBO|1|AA|U|285
3JBO|1|AA|U|286
3JBO|1|AA|U|287
3JBO|1|AA|G|288
3JBO|1|AA|A|289
3JBO|1|AA|G|290
3JBO|1|AA|A|291
3JBO|1|AA|U|292
3JBO|1|AA|U|293
3JBO|1|AA|G|294
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AL
- 60S ribosomal protein eL13
- Chain AO
- 60S ribosomal protein uL15
- Chain AP
- 60S ribosomal protein eL15
- Chain Ai
- 60S ribosomal protein eL44
Coloring options: