HL_3JBO_053

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

3JBO|1|AA|C|726

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_053 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.1327

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

3JBO|1|AA|U|718
3JBO|1|AA|C|719
3JBO|1|AA|U|720
3JBO|1|AA|U|721
3JBO|1|AA|G|722
3JBO|1|AA|A|723
3JBO|1|AA|A|724
3JBO|1|AA|A|725
3JBO|1|AA|C|726
3JBO|1|AA|A|727

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A8

60S ribosomal protein eL32

Chain AE

60S ribosomal protein uL3

Chain AO

60S ribosomal protein uL15