HL_3JBO_055

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UUAAUG

Length

6 nucleotides

Bulged bases

3JBO|1|AA|U|805

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_055 not in the Motif Atlas

Homologous match to HL_5TBW_016

Geometric discrepancy: 0.3504

The information below is about HL_5TBW_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

3JBO|1|AA|U|801
3JBO|1|AA|U|802
3JBO|1|AA|A|803
3JBO|1|AA|A|804
3JBO|1|AA|U|805
3JBO|1|AA|G|806

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AL

60S ribosomal protein eL13

Chain AO

60S ribosomal protein uL15

Chain AS

60S ribosomal protein eL18

Chain Ab

60S ribosomal protein eL36