HL_3JBO_057

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CAAAUG

Length

6 nucleotides

Bulged bases

3JBO|1|AA|A|885, 3JBO|1|AA|U|889

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_057 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.2832

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

3JBO|1|AA|C|883
3JBO|1|AA|A|884
3JBO|1|AA|A|885
3JBO|1|AA|A|888
3JBO|1|AA|U|889
3JBO|1|AA|G|890

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AL

60S ribosomal protein eL13

Chain AO

60S ribosomal protein uL15

Chain Ai

60S ribosomal protein eL44