HL_3JBO_058
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- CGAAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JBO_058 not in the Motif Atlas
- Homologous match to HL_8C3A_019
- Geometric discrepancy: 0.3265
- The information below is about HL_8C3A_019
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
3JBO|1|AA|C|963
3JBO|1|AA|G|964
3JBO|1|AA|A|965
3JBO|1|AA|A|966
3JBO|1|AA|A|967
3JBO|1|AA|G|968
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain Ah
- 60S ribosomal protein eL43
- Chain U
- 40S ribosomal protein uS15
- Chain V
- 40S ribosomal protein uS17
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