HL_3JBO_060

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

3JBO|1|AA|A|1032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_060 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.1474

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3JBO|1|AA|G|1029
3JBO|1|AA|C|1030
3JBO|1|AA|G|1031
3JBO|1|AA|A|1032
3JBO|1|AA|A|1033
3JBO|1|AA|A|1034
3JBO|1|AA|G|1035
3JBO|1|AA|A|1036
3JBO|1|AA|C|1037

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein uL2

Chain AP

60S ribosomal protein eL15

Chain Ac

60S ribosomal protein eL37