HL_3JBO_061

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UCUCAG

Length

6 nucleotides

Bulged bases

3JBO|1|AA|C|1078, 3JBO|1|AA|A|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_061 not in the Motif Atlas

Homologous match to HL_5TBW_022

Geometric discrepancy: 0.5072

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

3JBO|1|AA|U|1077
3JBO|1|AA|C|1078
3JBO|1|AA|U|1079
3JBO|1|AA|C|1080
3JBO|1|AA|A|1081
3JBO|1|AA|G|1082

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A4

60S ribosomal protein eL29

Chain AO

60S ribosomal protein uL15

Chain Ai

60S ribosomal protein eL44