HL_3JBO_062

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CUCAAUUUG

Length

9 nucleotides

Bulged bases

3JBO|1|AA|U|1205, 3JBO|1|AA|U|1206

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_062 not in the Motif Atlas

Homologous match to HL_8C3A_024

Geometric discrepancy: 0.2888

The information below is about HL_8C3A_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

3JBO|1|AA|C|1200
3JBO|1|AA|U|1201
3JBO|1|AA|C|1202
3JBO|1|AA|A|1203
3JBO|1|AA|A|1204
3JBO|1|AA|U|1205
3JBO|1|AA|U|1206
3JBO|1|AA|U|1207
3JBO|1|AA|G|1208

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A4

60S ribosomal protein eL29

Chain AR

60S ribosomal protein uL18