HL_3JBO_068

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CUGUGAUUG

Length

9 nucleotides

Bulged bases

3JBO|1|AA|G|1656, 3JBO|1|AA|U|1660

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_068 not in the Motif Atlas

Geometric match to HL_7A0S_041

Geometric discrepancy: 0.3966

The information below is about HL_7A0S_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07145.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

3JBO|1|AA|C|1654
3JBO|1|AA|U|1655
3JBO|1|AA|G|1656
3JBO|1|AA|U|1657
3JBO|1|AA|G|1658
3JBO|1|AA|A|1659
3JBO|1|AA|U|1660
3JBO|1|AA|U|1661
3JBO|1|AA|G|1662

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AT

60S ribosomal protein eL19

Chain AW

60S ribosomal protein uL22

Chain Ae

60S ribosomal protein eL39