HL_3JBO_080

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

3JBO|1|AA|U|2193

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_080 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.1092

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

3JBO|1|AA|C|2191
3JBO|1|AA|U|2192
3JBO|1|AA|U|2193
3JBO|1|AA|C|2194
3JBO|1|AA|G|2195
3JBO|1|AA|G|2196

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain Ag

60S ribosomal protein eL41

Chain Ah

60S ribosomal protein eL43