HL_3JBO_086

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

3JBO|1|AA|A|2549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_086 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.1792

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

3JBO|1|AA|G|2546
3JBO|1|AA|U|2547
3JBO|1|AA|A|2548
3JBO|1|AA|A|2549
3JBO|1|AA|C|2550
3JBO|1|AA|U|2551
3JBO|1|AA|A|2552
3JBO|1|AA|U|2553
3JBO|1|AA|G|2554
3JBO|1|AA|A|2555
3JBO|1|AA|C|2556

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA