HL_3JBO_087

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

3JBO|1|AA|A|2588, 3JBO|1|AA|U|2591

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_087 not in the Motif Atlas

Homologous match to HL_5TBW_050

Geometric discrepancy: 0.2141

The information below is about HL_5TBW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

3JBO|1|AA|U|2585
3JBO|1|AA|C|2586
3JBO|1|AA|U|2587
3JBO|1|AA|A|2588
3JBO|1|AA|A|2589
3JBO|1|AA|U|2590
3JBO|1|AA|U|2591
3JBO|1|AA|A|2592
3JBO|1|AA|G|2593

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain AM

60S ribosomal protein uL14