HL_3JBO_089
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GGAUGAAUUUCC
- Length
- 12 nucleotides
- Bulged bases
- 3JBO|1|AA|U|2883, 3JBO|1|AA|G|2884, 3JBO|1|AA|U|2887, 3JBO|1|AA|U|2888
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JBO_089 not in the Motif Atlas
- Geometric match to HL_8C3A_012
- Geometric discrepancy: 0.3347
- The information below is about HL_8C3A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 7
Unit IDs
3JBO|1|AA|G|2836
3JBO|1|AA|G|2837
3JBO|1|AA|A|2838
3JBO|1|AA|U|2883
3JBO|1|AA|G|2884
3JBO|1|AA|A|2885
3JBO|1|AA|A|2886
3JBO|1|AA|U|2887
3JBO|1|AA|U|2888
3JBO|1|AA|U|2915
3JBO|1|AA|C|2916
3JBO|1|AA|C|2917
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain A1
- 60S ribosomal protein eL27
- Chain A6
- 60S ribosomal protein eL30
- Chain AD
- 60S ribosomal protein uL2
- Chain AJ
- 60S ribosomal protein eL8
- Chain Aa
- 60S ribosomal protein eL34
- Chain Ah
- 60S ribosomal protein eL43
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