HL_3JBO_102

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UGACAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_102 not in the Motif Atlas

Homologous match to HL_5TBW_066

Geometric discrepancy: 0.1784

The information below is about HL_5TBW_066

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

3JBO|1|AA|U|3453
3JBO|1|AA|G|3454
3JBO|1|AA|A|3455
3JBO|1|AA|C|3456
3JBO|1|AA|A|3457
3JBO|1|AA|A|3458

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A7

60S ribosomal protein eL31

Chain AT

60S ribosomal protein eL19

Chain AX

60S ribosomal protein eL22