HL_3JBO_103

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CUGAACGCCUCUUAAG

Length

16 nucleotides

Bulged bases

3JBO|1|AA|G|3500, 3JBO|1|AA|U|3506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JBO|1|AA|C|3494
3JBO|1|AA|U|3495
3JBO|1|AA|G|3496
3JBO|1|AA|A|3497
3JBO|1|AA|A|3498
3JBO|1|AA|C|3499
3JBO|1|AA|G|3500
3JBO|1|AA|C|3501
3JBO|1|AA|C|3502
3JBO|1|AA|U|3503
3JBO|1|AA|C|3504
3JBO|1|AA|U|3505
3JBO|1|AA|U|3506
3JBO|1|AA|A|3507
3JBO|1|AA|A|3508
3JBO|1|AA|G|3509

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein uL6

Chain AK

60S ribosomal protein uL13

Chain Af

60S ribosomal protein eL40