HL_3JBO_103
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- CUGAACGCCUCUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 3JBO|1|AA|G|3500, 3JBO|1|AA|U|3506
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JBO_103 not in the Motif Atlas
- Homologous match to HL_9AXU_063
- Geometric discrepancy: 0.3294
- The information below is about HL_9AXU_063
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53269.4
- Basepair signature
- cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 12
Unit IDs
3JBO|1|AA|C|3494
3JBO|1|AA|U|3495
3JBO|1|AA|G|3496
3JBO|1|AA|A|3497
3JBO|1|AA|A|3498
3JBO|1|AA|C|3499
3JBO|1|AA|G|3500
3JBO|1|AA|C|3501
3JBO|1|AA|C|3502
3JBO|1|AA|U|3503
3JBO|1|AA|C|3504
3JBO|1|AA|U|3505
3JBO|1|AA|U|3506
3JBO|1|AA|A|3507
3JBO|1|AA|A|3508
3JBO|1|AA|G|3509
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AH
- 60S ribosomal protein uL6
- Chain AK
- 60S ribosomal protein uL13
- Chain Af
- 60S ribosomal protein eL40
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