HL_3JBO_109

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UAAACUA

Length

7 nucleotides

Bulged bases

3JBO|1|AC|A|114, 3JBO|1|AC|U|116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_109 not in the Motif Atlas

Geometric match to HL_5TBW_075

Geometric discrepancy: 0.2773

The information below is about HL_5TBW_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

3JBO|1|AC|U|111
3JBO|1|AC|A|112
3JBO|1|AC|A|113
3JBO|1|AC|A|114
3JBO|1|AC|C|115
3JBO|1|AC|U|116
3JBO|1|AC|A|117

Current chains

Chain AC

5.8S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AY

60S ribosomal protein uL23

Chain Ac

60S ribosomal protein eL37

Chain Ae

60S ribosomal protein eL39