HL_3JBO_113

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GAGCUGAGCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_113 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3178

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

3JBO|1|AA|G|3637
3JBO|1|AA|A|3638
3JBO|1|AA|G|3639
3JBO|1|AA|C|3640
3JBO|1|AA|U|3641
3JBO|1|AA|G|3644
3JBO|1|AA|A|3645
3JBO|1|AA|G|3646
3JBO|1|AA|C|3647
3JBO|1|AA|U|3648

Current chains

Chain AA

28S ribosomal RNA

Nearby chains